SeqAn3
3.4.0
The Modern C++ library for sequence analysis.
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Here is a list of all documented class members with links to the class documentation for each member:
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aa10li() :
seqan3::aa10li
aa10li_vector :
seqan3::aa10li
aa10murphy() :
seqan3::aa10murphy
aa10murphy_vector :
seqan3::aa10murphy
aa20() :
seqan3::aa20
aa20_vector :
seqan3::aa20
aa27() :
seqan3::aa27
aa27_vector :
seqan3::aa27
add_carriage_return :
seqan3::sam_file_output_options
,
seqan3::sequence_file_output_options
,
seqan3::structure_file_output_options
add_flag() :
seqan3::argument_parser
add_line() :
seqan3::argument_parser
add_list_item() :
seqan3::argument_parser
add_option() :
seqan3::argument_parser
add_positional_option() :
seqan3::argument_parser
add_section() :
seqan3::argument_parser
add_subsection() :
seqan3::argument_parser
algorithm_range_iterator :
seqan3::algorithm_result_generator_range< algorithm_executor_type >
,
seqan3::algorithm_result_generator_range< algorithm_executor_type >::algorithm_range_iterator
algorithm_result_generator_range() :
seqan3::algorithm_result_generator_range< algorithm_executor_type >
aligned_allocator() :
seqan3::aligned_allocator< value_t, alignment_v >
alignment :
seqan3::aligned_allocator< value_t, alignment_v >
,
seqan3::alignment_result< alignment_result_value_t >
,
seqan3::sam_record< field_types, field_ids >
alignment_result() :
seqan3::alignment_result< alignment_result_value_t >
all() :
seqan3::dynamic_bitset< bit_capacity >
allocate() :
seqan3::aligned_allocator< value_t, alignment_v >
alphabet_base() :
seqan3::alphabet_base< derived_type, size, char_t >
alphabet_size :
seqan3::alphabet_base< derived_type, size, char_t >
,
seqan3::alphabet_proxy< derived_type, alphabet_type >
,
seqan3::alphabet_tuple_base< derived_type, component_types >
,
seqan3::alphabet_variant< alternative_types >
,
seqan3::aminoacid_base< derived_type, size >
,
seqan3::custom::alphabet< char_type >
,
seqan3::custom::alphabet< uint_type >
,
seqan3::masked< sequence_alphabet_t >
,
seqan3::nucleotide_base< derived_type, size >
,
seqan3::phred_base< derived_type, size >
,
seqan3::qualified< sequence_alphabet_t, quality_alphabet_t >
,
seqan3::wuss< SIZE >
alphabet_tuple_base() :
seqan3::alphabet_tuple_base< derived_type, component_types >
alphabet_type :
seqan3::bi_fm_index< alphabet_t, text_layout_mode_, sdsl_index_type_ >
,
seqan3::fm_index< alphabet_t, text_layout_mode_, sdsl_index_type_ >
,
seqan3::scoring_scheme_base< derived_t, alphabet_t, score_t >
alphabet_variant() :
seqan3::alphabet_variant< alternative_types >
aminoacid_base() :
seqan3::aminoacid_base< derived_type, size >
aminoacid_scoring_scheme() :
seqan3::aminoacid_scoring_scheme< score_type >
any() :
seqan3::dynamic_bitset< bit_capacity >
app_name :
seqan3::argument_parser_meta_data
append() :
seqan3::configuration< configs_t >
argument_count :
seqan3::function_traits< std::function< return_t(args_t...)> >
argument_parser() :
seqan3::argument_parser
argument_parser_error() :
seqan3::argument_parser_error
argument_type_at :
seqan3::function_traits< std::function< return_t(args_t...)> >
arithmetic_range_validator() :
seqan3::arithmetic_range_validator< option_value_t >
assign() :
seqan3::bitpacked_sequence< alphabet_type >
,
seqan3::concatenated_sequences< underlying_container_type, data_delimiters_type >
,
seqan3::dynamic_bitset< bit_capacity >
,
seqan3::small_string< capacity_ >
,
seqan3::small_vector< value_type_, capacity_ >
assign_char() :
seqan3::alphabet_base< derived_type, size, char_t >
,
seqan3::alphabet_proxy< derived_type, alphabet_type >
,
seqan3::masked< sequence_alphabet_t >
,
seqan3::qualified< sequence_alphabet_t, quality_alphabet_t >
,
seqan3::structured_aa< sequence_alphabet_t, structure_alphabet_t >
,
seqan3::structured_rna< sequence_alphabet_t, structure_alphabet_t >
assign_char_to() :
seqan3::custom::alphabet< char_type >
,
seqan3::custom::alphabet< uint_type >
assign_phred() :
seqan3::alphabet_proxy< derived_type, alphabet_type >
,
seqan3::phred_base< derived_type, size >
,
seqan3::qualified< sequence_alphabet_t, quality_alphabet_t >
assign_rank() :
seqan3::alphabet_base< derived_type, size, char_t >
,
seqan3::alphabet_proxy< derived_type, alphabet_type >
,
seqan3::alphabet_tuple_base< derived_type, component_types >
,
seqan3::alphabet_variant< alternative_types >
,
seqan3::phred_base< derived_type, size >
,
seqan3::semialphabet_any< size >
assign_rank_to() :
seqan3::custom::alphabet< char_type >
,
seqan3::custom::alphabet< uint_type >
assign_string() :
seqan3::cigar
assign_unaligned :
seqan3::gap_decorator< inner_type >
,
writable_aligned_sequence
at() :
seqan3::bitpacked_sequence< alphabet_type >
,
seqan3::concatenated_sequences< underlying_container_type, data_delimiters_type >
,
seqan3::dynamic_bitset< bit_capacity >
,
seqan3::gap_decorator< inner_type >
,
seqan3::small_vector< value_type_, capacity_ >
author :
seqan3::argument_parser_meta_data
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